Pesquisa com array de objetos

Project.aggregate([
  { "$match": { "project_id": projectId} },
  { "$project": {
    "project_id": 1,
    "updated_at": 1,
    "created_at": 1,
    "owner": 1,
    "name": 1,
    "combined": {
      "$concatArrays": [
        { "$map": {
          "input": {
            "$filter": {
              "input": "$uploaded_files",
              "as": "uf",
              "cond": { "$eq": ["$$uf.upload_id", uploadId ] }
            }
          },
          "as": "uf",
          "in": {
            "$arrayToObject": {
              "$concatArrays": [
                { "$objectToArray": "$$uf" },
                [{ "k": "type", "v": "uploaded_files" }]
              ]
            }
          }
        }},
        { "$map": {
          "input": {
            "$filter": {
              "input": "$file_history",
              "as": "fh",
              "cond": { "$eq": ["$$fh.upload_id", uploadId ] }
            }
          },
          "as": "fh",
          "in": {
            "$arrayToObject": {
              "$concatArrays": [
                { "$objectToArray": "$$fh" },
                [{ "k": "type", "v": "file_history" }]
              ]
            }
          }
        }}
      ]
    }
  }},
  { "$unwind": "$combined" },
  { "$lookup": {
    "from": "files",
    "localField": "combined.file",
    "foreignField": "_id",
    "as": "combined.file"
  }},
  { "$unwind": "$combined.file" },
  { "$lookup": {
    "from": "users",
    "localField": "owner",
    "foreignField": "_id",
    "as": "owner"
  }},
  { "$unwind": "$owner" },
  { "$group": {
    "_id": "$_id",
    "project_id": { "$first": "$project_id" },
    "updated_at": { "$first": "$updated_at" },
    "created_at": { "$first": "$created_at" },
    "owner": { "$first": "$owner" },
    "name": { "$first": "$name" },
    "combined": { "$push": "$combined" }
  }},
  { "$project": {
    "project_id": 1,
    "updated_at": 1,
    "created_at": 1,
    "owner": 1,
    "name": 1,
    "uploaded_files": {
      "$filter": {
        "input": "$combined",
        "as": "cf",
        "cond": { "$eq": [ "$$cf.type", "uploaded_files" ] }
      }    
    },
    "file_history": {
      "$filter": {
        "input": "$combined",
        "as": "cf",
        "cond": { "$eq": [ "$$cf.type", "file_history" ] }
      }    
    }
  }}
])

1. 
   Junte os dois arrays na fonte e marque-os, então $unwind primeiro
   
2. 
   Faça o $lookup nos detalhes combinados e $unwind este
   
3. 
   Faça o $lookup na outra fonte estrangeira e $unwind este
   
4. 
   $group o documento de volta junto com uma única matriz.
   
5. 
   $filter pelo campo "tag names" ou "type" que adicionamos para "separar" os arrays.