<table border="1" width="100%" id="table1">
<?php
$query = mysql_query("SELECT sku, SUM(quan) AS Sum_Of_Quan FROM pickcount GROUP BY sku");
while($fetch = mysql_fetch_array($query))
{
?>
<tr>
<td><?php echo $fetch['sku']; ?></td>
<td><?php echo $fetch['Sum_Of_Quan']; ?></td>
</tr>
<?php
}
?>
</table>
Tente substituir a estrutura da sua tabela pela estrutura acima e verifique o resultado