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Por que o MySQL não usa a chave primária em JOIN mais ORDER?


Você pode tentar esta versão (basicamente ela obtém primeiro as 420 linhas do corder table, mantém os 20 deles e depois faz as 3 associações externas):
SELECT
    corder.id,
    corder.public_id,
    CONCAT(buyer.fname," ",buyer.lname) AS buyer_name,
    corder.status,
    corder.payment,
    corder.reserved AS R,
    corder.tracking_id != "" AS A,
    corder.payment_received AS pay_date,
    invoice.invoice_no AS inv,
    invoice.receipt_no AS rec,
    invoice.public AS pub_inv,
    proforma.proforma_no AS prof,
    proforma.public AS pub_pf,
    corder.rating,
    corder.rating_comments!="" AS got_comment
FROM
    ( SELECT * 
      FROM corder
      ORDER BY
        id DESC 
      LIMIT 400, 20
    )
    AS corder
LEFT JOIN user as buyer ON buyer.id = corder.buyer
LEFT JOIN invoice AS invoice ON invoice.id = corder.invoice
LEFT JOIN invoice AS proforma ON proforma.id = corder.proforma
ORDER BY
    corder.id DESC ;